README for dnmsw

Usage

To compile serial versions:

% gcc -O3 -lm -o sw_serial_v2 sw_serial_v2.c

To run serial versions:

% sw_serial_v2 64seqs.txt

To compile parallel versions:

% module add gcc openmpi/1.3-gcc
% mpicc -O3 -fopenmp -o sw_hybrid_v7 sw_hybrid_v7.c

To run parallel versions:

% spattach -i -n 4 time ./run_job sw_hybrid_v7 4 8 2> v7_4_8.128_1.out

OR

% spattach -j 100415520913 time ./run_job sw_hybrid_v7 4 8 2> v7_4_8.128_1.out