HTS Scripts

A collection of mostly-Java scripts and tools for processing high-throughput sequencing data, gradually being dredged from my private repository!

Getting started

If you're running on Linux, you'll likely need to download and install Sun Java:

    http://java.sun.com/

You'll also need Ant to compile this:

    http://ant.apache.org/

Type

  ant

To build the system. Should produce a file named hts-scripts.jar. Add this, plus the contents of the lib directory to your CLASSPATH and you should be good to go.