This whole dir is eclipse pydev project.

Layout: src/ sources, apparently and some packages General idea is that every python script that is supposed to be run with command line arguments should be in 'src' folder (so that it won't cause problems with PYTHONPATH when run from command line). Scripts that are run withoud command like arguments and thus can be conveniently run from eclipse, are allowed in package folders as well (because eclipse adds src to python path). data/ endo.dna -- ignored (dl from http://save-endo.cs.uu.nl/endo.zip)