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pgdd

Pgdd is a project mainly written in PYTHON and C, it's free.

Dynamic contents within the plant genome duplication database

.. image:: http://chibba.agtec.uga.edu/duplication/images/icons/PGDD.png :alt: pgdd

Server scripts in PGDD

This package includes most of the server contents on Plant genome duplication database <http://chibba.agtec.uga.edu/duplication>_ (except the database connector script for security reasons). Contains scripts, templates, css and images folder.

Installation

  • Apache configuration. mod_python <http://www.modpython.org/>__ is required for this to run on your server. You might also need to change apache2.conf to allow mod_python.publisher to treat your scripts as python scripts::

    For Bao's mod_python stuff

    <Directory "/var/www/duplication/"> AddHandler mod_python .py PythonHandler mod_python.publisher PythonDebug On

    <Directory "/var/www/duplication/scripts/"> AddHandler mod_python .py PythonHandler mod_python.publisher PythonDebug On

    <Directory "/var/www/duplication/images/"> SetHandler None

    <Directory "/var/www/duplication/css/"> SetHandler None

  • MySQL databases. Look at the database connector script in scripts/preferences.py. The default database name is bao and two tables loci and block with the schema documented here <http://chibba.agtec.uga.edu/duplication/wiki/index.php/PGDD_documentation>__.

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